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Research in Computational Molecular Biology [electronic resource] : 11th Annunal International Conference, RECOMB 2007, Oakland, CA, USA, April 21-25, 2007, Proceedings / edited by Terry Speed, Haiyan Huang.

Contributor(s): Speed, Terry [editor.] | Huang, Haiyan [editor.] | SpringerLink (Online service).
Material type: materialTypeLabelBookSeries: Lecture Notes in Bioinformatics: 4453Publisher: Berlin, Heidelberg : Springer Berlin Heidelberg : Imprint: Springer, 2007Edition: 1st ed. 2007.Description: XVI, 552 p. online resource.Content type: text Media type: computer Carrier type: online resourceISBN: 9783540716815.Subject(s): Biochemistry | Algorithms | Artificial intelligence -- Data processing | Computer science -- Mathematics | Discrete mathematics | Database management | Artificial intelligence | Biochemistry | Algorithms | Data Science | Discrete Mathematics in Computer Science | Database Management | Artificial IntelligenceAdditional physical formats: Printed edition:: No title; Printed edition:: No titleDDC classification: 572 Online resources: Click here to access online
Contents:
QNet: A Tool for Querying Protein Interaction Networks -- Pairwise Global Alignment of Protein Interaction Networks by Matching Neighborhood Topology -- Reconstructing the Topology of Protein Complexes -- Network Legos: Building Blocks of Cellular Wiring Diagrams -- An Efficient Method for Dynamic Analysis of Gene Regulatory Networks and in silico Gene Perturbation Experiments -- A Feature-Based Approach to Modeling Protein-DNA Interactions -- Network Motif Discovery Using Subgraph Enumeration and Symmetry-Breaking -- Nucleosome Occupancy Information Improves de novo Motif Discovery -- Framework for Identifying Common Aberrations in DNA Copy Number Data -- Estimating Genome-Wide Copy Number Using Allele Specific Mixture Models -- GIMscan: A New Statistical Method for Analyzing Whole-Genome Array CGH Data -- Production-Passage-Time Approximation: A New Approximation Method to Accelerate the Simulation Process of Enzymatic Reactions -- Shift-Invariant Adaptive Double Threading: Learning MHC II - Peptide Binding -- Reconstructing the Phylogeny of Mobile Elements -- Beyond Galled Trees - Decomposition and Computation of Galled Networks -- Variational Upper Bounds for Probabilistic Phylogenetic Models -- Heuristics for the Gene-Duplication Problem: A ?(n) Speed-Up for the Local Search -- Support Vector Training of Protein Alignment Models -- Tools for Simulating and Analyzing RNA Folding Kinetics -- Multiple Sequence Alignment Based on Profile Alignment of Intermediate Sequences -- Connectedness Profiles in Protein Networks for the Analysis of Gene Expression Data -- Multivariate Segmentation in the Analysis of Transcription Tiling Array Data -- A Bayesian Model That Links Microarray mRNA Measurements to Mass Spectrometry Protein Measurements -- Rearrangements in Genomes with Centromeres Part I:Translocations -- Identification of Deletion Polymorphisms from Haplotypes -- Free Energy Estimates of All-Atom Protein Structures Using Generalized Belief Propagation -- Minimizing and Learning Energy Functions for Side-Chain Prediction -- Protein Conformational Flexibility Analysis with Noisy Data -- Deterministic Pharmacophore Detection Via Multiple Flexible Alignment of Drug-Like Molecules -- Design of Compact, Universal DNA Microarrays for Protein Binding Microarray Experiments -- Improved Ranking Functions for Protein and Modification-Site Identifications -- Peptide Retention Time Prediction Yields Improved Tandem Mass Spectrum Identification for Diverse Chromatography Conditions -- A Fast and Accurate Algorithm for the Quantification of Peptides from Mass Spectrometry Data -- Association Mapping of Complex Diseases with Ancestral Recombination Graphs: Models and Efficient Algorithms -- An Efficient and Accurate Graph-Based Approach to Detect Population Substructure -- RB-Finder: An Improved Distance-Based Sliding Window Method to Detect Recombination Breakpoints -- Comparative Analysis of Spatial Patterns of Gene Expression in Drosophila melanogaster Imaginal Discs.
In: Springer Nature eBook
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QNet: A Tool for Querying Protein Interaction Networks -- Pairwise Global Alignment of Protein Interaction Networks by Matching Neighborhood Topology -- Reconstructing the Topology of Protein Complexes -- Network Legos: Building Blocks of Cellular Wiring Diagrams -- An Efficient Method for Dynamic Analysis of Gene Regulatory Networks and in silico Gene Perturbation Experiments -- A Feature-Based Approach to Modeling Protein-DNA Interactions -- Network Motif Discovery Using Subgraph Enumeration and Symmetry-Breaking -- Nucleosome Occupancy Information Improves de novo Motif Discovery -- Framework for Identifying Common Aberrations in DNA Copy Number Data -- Estimating Genome-Wide Copy Number Using Allele Specific Mixture Models -- GIMscan: A New Statistical Method for Analyzing Whole-Genome Array CGH Data -- Production-Passage-Time Approximation: A New Approximation Method to Accelerate the Simulation Process of Enzymatic Reactions -- Shift-Invariant Adaptive Double Threading: Learning MHC II - Peptide Binding -- Reconstructing the Phylogeny of Mobile Elements -- Beyond Galled Trees - Decomposition and Computation of Galled Networks -- Variational Upper Bounds for Probabilistic Phylogenetic Models -- Heuristics for the Gene-Duplication Problem: A ?(n) Speed-Up for the Local Search -- Support Vector Training of Protein Alignment Models -- Tools for Simulating and Analyzing RNA Folding Kinetics -- Multiple Sequence Alignment Based on Profile Alignment of Intermediate Sequences -- Connectedness Profiles in Protein Networks for the Analysis of Gene Expression Data -- Multivariate Segmentation in the Analysis of Transcription Tiling Array Data -- A Bayesian Model That Links Microarray mRNA Measurements to Mass Spectrometry Protein Measurements -- Rearrangements in Genomes with Centromeres Part I:Translocations -- Identification of Deletion Polymorphisms from Haplotypes -- Free Energy Estimates of All-Atom Protein Structures Using Generalized Belief Propagation -- Minimizing and Learning Energy Functions for Side-Chain Prediction -- Protein Conformational Flexibility Analysis with Noisy Data -- Deterministic Pharmacophore Detection Via Multiple Flexible Alignment of Drug-Like Molecules -- Design of Compact, Universal DNA Microarrays for Protein Binding Microarray Experiments -- Improved Ranking Functions for Protein and Modification-Site Identifications -- Peptide Retention Time Prediction Yields Improved Tandem Mass Spectrum Identification for Diverse Chromatography Conditions -- A Fast and Accurate Algorithm for the Quantification of Peptides from Mass Spectrometry Data -- Association Mapping of Complex Diseases with Ancestral Recombination Graphs: Models and Efficient Algorithms -- An Efficient and Accurate Graph-Based Approach to Detect Population Substructure -- RB-Finder: An Improved Distance-Based Sliding Window Method to Detect Recombination Breakpoints -- Comparative Analysis of Spatial Patterns of Gene Expression in Drosophila melanogaster Imaginal Discs.

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