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Advances in Bioinformatics and Computational Biology [electronic resource] : 13th Brazilian Symposium on Bioinformatics, BSB 2020, São Paulo, Brazil, November 23-27, 2020, Proceedings / edited by João C. Setubal, Waldeyr Mendes Silva.

Contributor(s): Setubal, João C [editor.] | Silva, Waldeyr Mendes [editor.] | SpringerLink (Online service).
Material type: materialTypeLabelBookSeries: Lecture Notes in Bioinformatics: 12558Publisher: Cham : Springer International Publishing : Imprint: Springer, 2020Edition: 1st ed. 2020.Description: XIII, 272 p. 83 illus., 63 illus. in color. online resource.Content type: text Media type: computer Carrier type: online resourceISBN: 9783030657758.Subject(s): Bioinformatics | BioinformaticsAdditional physical formats: Printed edition:: No title; Printed edition:: No titleDDC classification: 570.285 Online resources: Click here to access online
Contents:
A Classification of de Bruijn Graph approaches for De Novo Fragment Assembly -- Redundancy Treatment of NGS Contigs in Microbial Genome Finishing with Hashing-Based Approach -- Efficient Out-of-core Contig Generation -- In silico Pathogenomic Analysis of Corynebacterium pseudotuberculosis biovar ovis -- Assessing the sex-related genomic composition diffeerence using a K-mer-based approach: a case of study in Arapaima gigas (Pirarucu) -- COVID-19 X-ray Image Diagnostic with Deep Neural Networks -- Classification of Musculoskeletal Abnormalities with Convolutional Neural Networks -- Combining mutation and gene network data in a machine learning approach for false-positive cancer driver gene discovery -- Unraveling the role of Nanobodies Tetrad on their Folding and Stability Assisted by Machine and Deep Learning Algorithms -- Experiencing DfAnalyzer for Runtime Analysis of Phylogenomic Dataows -- Sorting by Reversals and Transpositions with Proportion Restriction -- Heuristics for Breakpoint Graph Decomposition with Applications in Genome Rearrangement Problems -- Center Genome With Respect to the Rank Distance -- ImTeNet: Image-Text Classification Network for Abnormality Detection and Automatic Reporting on Musculoskeletal Radiographs -- A scientometric overview of bioinformatics tools in the Pseudomonas putida genome study -- Polysome-seq as a Measure of Translational Profile from Deoxyhypusine Synthase Mutant in Saccharomyces cerevisiae -- Anti-CD3 stimulated T cell transcriptome reveals novel ncRNAs and correlates with a suppressive profile -- A simplified complex network-based approach to mRNA and ncRNA transcript classification -- A systems biology driven approach to map the EP300 interactors using comprehensive protein interaction network -- Analyzing switch regions of human Rab10 by molecular dynamics simulations -- Importance of meta-analysis in studies involving plant responses to climate change in Brazil -- A brief history of Bioinformatics told by data visualization -- Computational Simulations for Cyclizations Catalyzed by Plant Monoterpene Synthases -- Oncogenic signaling pathways in Mucopolysaccharidoses -- Natural products as potential inhibitors for SARS-CoV-2 papain-like protease: an in silico study.
In: Springer Nature eBookSummary: This book constitutes the refereed proceedings of the Brazilian Symposium on Bioinformatics, BSB 2020, held in São Paulo, Brazil, in November 2020. Due to COVID-19 pandemic the conference was held virtually The 20 revised full papers and 5 short papers were carefully reviewed and selected from 45 submissions. The papers address a broad range of current topics in computational biology and bioinformatics.
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A Classification of de Bruijn Graph approaches for De Novo Fragment Assembly -- Redundancy Treatment of NGS Contigs in Microbial Genome Finishing with Hashing-Based Approach -- Efficient Out-of-core Contig Generation -- In silico Pathogenomic Analysis of Corynebacterium pseudotuberculosis biovar ovis -- Assessing the sex-related genomic composition diffeerence using a K-mer-based approach: a case of study in Arapaima gigas (Pirarucu) -- COVID-19 X-ray Image Diagnostic with Deep Neural Networks -- Classification of Musculoskeletal Abnormalities with Convolutional Neural Networks -- Combining mutation and gene network data in a machine learning approach for false-positive cancer driver gene discovery -- Unraveling the role of Nanobodies Tetrad on their Folding and Stability Assisted by Machine and Deep Learning Algorithms -- Experiencing DfAnalyzer for Runtime Analysis of Phylogenomic Dataows -- Sorting by Reversals and Transpositions with Proportion Restriction -- Heuristics for Breakpoint Graph Decomposition with Applications in Genome Rearrangement Problems -- Center Genome With Respect to the Rank Distance -- ImTeNet: Image-Text Classification Network for Abnormality Detection and Automatic Reporting on Musculoskeletal Radiographs -- A scientometric overview of bioinformatics tools in the Pseudomonas putida genome study -- Polysome-seq as a Measure of Translational Profile from Deoxyhypusine Synthase Mutant in Saccharomyces cerevisiae -- Anti-CD3 stimulated T cell transcriptome reveals novel ncRNAs and correlates with a suppressive profile -- A simplified complex network-based approach to mRNA and ncRNA transcript classification -- A systems biology driven approach to map the EP300 interactors using comprehensive protein interaction network -- Analyzing switch regions of human Rab10 by molecular dynamics simulations -- Importance of meta-analysis in studies involving plant responses to climate change in Brazil -- A brief history of Bioinformatics told by data visualization -- Computational Simulations for Cyclizations Catalyzed by Plant Monoterpene Synthases -- Oncogenic signaling pathways in Mucopolysaccharidoses -- Natural products as potential inhibitors for SARS-CoV-2 papain-like protease: an in silico study.

This book constitutes the refereed proceedings of the Brazilian Symposium on Bioinformatics, BSB 2020, held in São Paulo, Brazil, in November 2020. Due to COVID-19 pandemic the conference was held virtually The 20 revised full papers and 5 short papers were carefully reviewed and selected from 45 submissions. The papers address a broad range of current topics in computational biology and bioinformatics.

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